Welcome to PathAIA’s documentation!

Documentation

• API References
  • deep
    • data
    • dense
  • patches
    • errors
    • filters
      • Error
      • UnknownMethodError
      • standardize_filters()
      • filter_hasdapi()
      • filter_has_significant_dapi()
      • get_tissue_from_rgb()
      • get_tissue_from_lab()
      • get_tissue()
      • filter_has_tissue_he()
    • functional_api
    • object_api
    • slide_filters
      • filter_remove_small_objects()
      • filter_thumbnail()
      • filter_fluo_thumbnail()
      • get_json2pathaia_filter()
    • visu
      • preview_from_queries()
  • semantic
    • functional_api
  • util
    • basic
      • ifnone()
      • dumb()
    • images
      • regular_grid()
      • get_coords_from_mask()
      • unlabeled_regular_grid_list()
      • images_in_folder()
      • sample_img()
      • sample_img_sep_channels()
    • management
      • Error
      • LevelNotFoundError
      • EmptyProjectError
      • SlideNotFoundError
      • PatchesNotFoundError
      • UnknownColumnError
      • get_patch_csv_from_patch_folder()
      • get_patch_folders_in_project()
      • get_slide_file()
      • read_patch_file()
      • write_slide_predictions()
      • descriptors_to_csv()
      • PathaiaHandler
    • paths
      • slides_in_folder()
      • slide_basename()
      • imfiles_in_folder()
      • dataset2folders()
      • get_files()
      • safe_rmtree()
    • types
      • Coord
      • Patch
      • Slide
• Installation
• Support

Indices and tables

• Index

• Module Index

• Search Page