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Welcome to PathAIA’s documentation!¶

Documentation

  • API References
    • deep
      • data
      • dense
    • patches
      • errors
      • filters
        • Error
        • UnknownMethodError
        • standardize_filters()
        • filter_hasdapi()
        • filter_has_significant_dapi()
        • get_tissue_from_rgb()
        • get_tissue_from_lab()
        • get_tissue()
        • filter_has_tissue_he()
      • functional_api
      • object_api
      • slide_filters
        • filter_remove_small_objects()
        • filter_thumbnail()
        • filter_fluo_thumbnail()
        • get_json2pathaia_filter()
      • visu
        • preview_from_queries()
    • semantic
      • functional_api
    • util
      • basic
        • ifnone()
        • dumb()
      • images
        • regular_grid()
        • get_coords_from_mask()
        • unlabeled_regular_grid_list()
        • images_in_folder()
        • sample_img()
        • sample_img_sep_channels()
      • management
        • Error
        • LevelNotFoundError
        • EmptyProjectError
        • SlideNotFoundError
        • PatchesNotFoundError
        • UnknownColumnError
        • get_patch_csv_from_patch_folder()
        • get_patch_folders_in_project()
        • get_slide_file()
        • read_patch_file()
        • write_slide_predictions()
        • descriptors_to_csv()
        • PathaiaHandler
      • paths
        • slides_in_folder()
        • slide_basename()
        • imfiles_in_folder()
        • dataset2folders()
        • get_files()
        • safe_rmtree()
      • types
        • Coord
        • Patch
        • Slide
  • Installation
  • Support

Indices and tables¶

  • Index

  • Module Index

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