API References

• deep
  • data
  • dense
• patches
  • errors
  • filters
    • Error
    • UnknownMethodError
    • standardize_filters()
    • filter_hasdapi()
    • filter_has_significant_dapi()
    • get_tissue_from_rgb()
    • get_tissue_from_lab()
    • get_tissue()
    • filter_has_tissue_he()
  • functional_api
  • object_api
  • slide_filters
    • filter_remove_small_objects()
    • filter_thumbnail()
    • filter_fluo_thumbnail()
    • get_json2pathaia_filter()
  • visu
    • preview_from_queries()
• semantic
  • functional_api
• util
  • basic
    • ifnone()
    • dumb()
  • images
    • regular_grid()
    • get_coords_from_mask()
    • unlabeled_regular_grid_list()
    • images_in_folder()
    • sample_img()
    • sample_img_sep_channels()
  • management
    • Error
    • LevelNotFoundError
    • EmptyProjectError
    • SlideNotFoundError
    • PatchesNotFoundError
    • UnknownColumnError
    • get_patch_csv_from_patch_folder()
    • get_patch_folders_in_project()
    • get_slide_file()
    • read_patch_file()
    • write_slide_predictions()
    • descriptors_to_csv()
    • PathaiaHandler
      • PathaiaHandler.random_split()
      • PathaiaHandler.list_patches()
      • PathaiaHandler.extract_features()
  • paths
    • slides_in_folder()
    • slide_basename()
    • imfiles_in_folder()
    • dataset2folders()
    • get_files()
    • safe_rmtree()
  • types
    • Coord
    • Patch
      • Patch.id
      • Patch.slidename
      • Patch.position
      • Patch.level
      • Patch.size
      • Patch.size_0
      • Patch.parent
      • Patch.get_fields()
      • Patch.to_csv_row()
      • Patch.from_csv_row()
    • Slide
      • Slide.dimensions
      • Slide.get_best_level_for_downsample()
      • Slide.read_region()
      • Slide.get_thumbnail()