Index

C

Coord (class in pathaia.util.types)

D

dataset2folders() (in module pathaia.util.paths) descriptors_to_csv() (in module pathaia.util.management)

dimensions (Slide property) dumb() (in module pathaia.util.basic)

E

EmptyProjectError

Error, [1] extract_features() (PathaiaHandler method)

F

filter_fluo_thumbnail() (in module pathaia.patches.slide_filters) filter_has_significant_dapi() (in module pathaia.patches.filters) filter_has_tissue_he() (in module pathaia.patches.filters)

filter_hasdapi() (in module pathaia.patches.filters) filter_remove_small_objects() (in module pathaia.patches.slide_filters) filter_thumbnail() (in module pathaia.patches.slide_filters) from_csv_row() (Patch class method)

G

get_best_level_for_downsample() (Slide method) get_coords_from_mask() (in module pathaia.util.images) get_fields() (Patch class method) get_files() (in module pathaia.util.paths) get_json2pathaia_filter() (in module pathaia.patches.slide_filters) get_patch_csv_from_patch_folder() (in module pathaia.util.management)

get_patch_folders_in_project() (in module pathaia.util.management) get_slide_file() (in module pathaia.util.management) get_thumbnail() (Slide method) get_tissue() (in module pathaia.patches.filters) get_tissue_from_lab() (in module pathaia.patches.filters) get_tissue_from_rgb() (in module pathaia.patches.filters)

I

id (Patch attribute) ifnone() (in module pathaia.util.basic)

images_in_folder() (in module pathaia.util.images) imfiles_in_folder() (in module pathaia.util.paths)

L

level (Patch attribute)

LevelNotFoundError list_patches() (PathaiaHandler method)

M

module pathaia.patches.filters pathaia.patches.slide_filters pathaia.patches.visu pathaia.util.basic pathaia.util.images pathaia.util.management pathaia.util.paths pathaia.util.types

P

parent (Patch attribute) Patch (class in pathaia.util.types) PatchesNotFoundError pathaia.patches.filters module pathaia.patches.slide_filters module pathaia.patches.visu module pathaia.util.basic module

pathaia.util.images module pathaia.util.management module pathaia.util.paths module pathaia.util.types module PathaiaHandler (class in pathaia.util.management) position (Patch attribute) preview_from_queries() (in module pathaia.patches.visu)

R

random_split() (PathaiaHandler method) read_patch_file() (in module pathaia.util.management)

read_region() (Slide method) regular_grid() (in module pathaia.util.images)

S

safe_rmtree() (in module pathaia.util.paths) sample_img() (in module pathaia.util.images) sample_img_sep_channels() (in module pathaia.util.images) size (Patch attribute) size_0 (Patch attribute)

Slide (class in pathaia.util.types) slide_basename() (in module pathaia.util.paths) slidename (Patch attribute) SlideNotFoundError slides_in_folder() (in module pathaia.util.paths) standardize_filters() (in module pathaia.patches.filters)

T

to_csv_row() (Patch method)

U

UnknownColumnError

UnknownMethodError unlabeled_regular_grid_list() (in module pathaia.util.images)

W

write_slide_predictions() (in module pathaia.util.management)